MEME - Submission form

Version 4.1.0

Use this form to submit DNA or protein sequences to MEME. MEME will analyze your sequences for similarities among them and produce a description (motif) for each pattern it discovers.

Data Submission Form Required

Your e-mail address:

Re-enter e-mail address:

Please enter the sequences which you believe share one or more
motifs. The sequences may contain no more than 60000 characters
total in any of a large number of formats.

Enter the name of a file containing the sequences here:

or
the actual sequences here (Sample Protein Input Sequences):

How do you think the occurrences of a single motif are distributed among the sequences?
One per sequence
Zero or one per sequence
Any number of repetitions
Note:The maximum number of occurrences of a motif is limited to 300.

MEME will find the optimum width of each motif within the limits you specify here:
Minimum width (>= 2)
Maximum width (<= 300)

Maximum number of motifs to find

Optional

Description of your sequences:

MEME will find the optimum number of sites for each motif within the limits you specify here:
Minimum sites (>= 2)
Maximum sites (<= 300)

Shuffle sequence letters

Enter the name of a file containing a background Markov model :

DNA-ONLY OPTIONS
(Ignored for protein searches)

Search given strand only
Look for palindromes only